Pseudomonas aeruginosa ATCC 33351

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 33351
Species Pseudomonas aeruginosa
Strain ATCC 33351
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5949
Partial Genes 399
Host Information
Geographic Location
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 760
trpE
8		 mutL
5		 guaA
36		 nuoD
4		 acsA
15		 aroE
121		 ppsA
15
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001420245.1
Assembly Status latest
Scaffolds
Contigs 328
Contig N50 86376
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04028040
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5949
CDS 5887
pseudo 342
tRNA 58
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2654
Cytoplasmic Membrane 1314
Periplasmic 168
Outer Membrane 151
Extracellular 71
Unknown 1392
Unknown (This protein may have multiple localization sites) 146
Flagellar 18
Fimbrial 5
Host Associated 1
T3SS 4
Outer Membrane Vesicle 16

Replicons

304 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF