Pseudomonas aeruginosa ATCC 33352

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 33352
Species Pseudomonas aeruginosa
Strain ATCC 33352
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5610
Partial Genes 305
Host Information
Geographic Location
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 549
ppsA
1
nuoD
4
guaA
12
aroE
5
acsA
7
trpE
7
mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 231
Contig N50 74897
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04028041
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5610
CDS 5549
pseudo 260
tRNA 57
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2560
Cytoplasmic Membrane 1282
Periplasmic 178
Outer Membrane 171
Extracellular 76
Unknown 1202
Unknown (This protein may have multiple localization sites) 138
Flagellar 18
Fimbrial 5
Host Associated 5
T3SS 4
Outer Membrane Vesicle 81

Replicons

218 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF