Pseudomonas aeruginosa ATCC 33354

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 33354
Species Pseudomonas aeruginosa
Strain ATCC 33354
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 6158
Partial Genes 344
Host Information
Geographic Location
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
guaA
12		 aroE
5		 trpE
~20		 nuoD
4		 mutL
~11		 acsA
11		 ppsA
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001444745.1
Assembly Status latest
Scaffolds
Contigs 315
Contig N50 148687
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04028043
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6158
CDS 6096
pseudo 316
tRNA 58
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2721
Cytoplasmic Membrane 1347
Periplasmic 172
Outer Membrane 160
Extracellular 77
Unknown 1483
Unknown (This protein may have multiple localization sites) 146
Flagellar 18
Fimbrial 6
Host Associated 1
T3SS 4
Outer Membrane Vesicle 12

Replicons

306 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF