Pseudomonas aeruginosa ATCC 33355

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 33355
Species Pseudomonas aeruginosa
Strain ATCC 33355
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 6040
Partial Genes 172
Host Information
Geographic Location
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 377
nuoD
1
acsA
103
ppsA
6
trpE
4
mutL
5
guaA
5
aroE
8
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 145
Contig N50 114831
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04028044
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6040
CDS 5978
pseudo 166
tRNA 58
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2691
Cytoplasmic Membrane 1314
Periplasmic 173
Outer Membrane 164
Extracellular 73
Unknown 1409
Unknown (This protein may have multiple localization sites) 160
Flagellar 17
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 10

Replicons

138 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF