Pseudomonas aeruginosa ATCC 33359

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 33359
Species Pseudomonas aeruginosa
Strain ATCC 33359
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5763
Partial Genes 379
Host Information
Geographic Location
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2228
guaA
118
nuoD
86
aroE
205
trpE
145
acsA
73
ppsA
109
mutL
87
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 289
Contig N50 64295
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04028048
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5763
CDS 5702
pseudo 337
tRNA 57
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2631
Cytoplasmic Membrane 1288
Periplasmic 169
Outer Membrane 154
Extracellular 46
Unknown 1261
Unknown (This protein may have multiple localization sites) 154
Flagellar 16
Fimbrial 9
Outer Membrane Vesicle 1

Replicons

273 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF