| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas viridiflava CC1582 |
| Species | Pseudomonas viridiflava |
| Strain | CC1582 |
| Description/Title | Sample from Pseudomonas viridiflava CC1582 |
| Annotated Genes | 5400 |
| Partial Genes | 199 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | France |
| Isolation Source | epilithon |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 211 |
| Contigs | 553 |
| Contig N50 | 31043 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02471565 |
| NCBI Taxonomy ID | 1357290 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5365 |
| CDS | 5333 |
| pseudo | 35 |
| tRNA | 28 |
| ncRNA | 2 |
| rRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2212 |
| Cytoplasmic Membrane | 1195 |
| Periplasmic | 153 |
| Outer Membrane | 110 |
| Extracellular | 45 |
| Unknown | 1118 |
| Unknown (This protein may have multiple localization sites) | 123 |
| Flagellar | 18 |
| Fimbrial | 3 |
| T3SS | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |