Pseudomonas viridiflava TA043

Strain Overview
Organism Name Pseudomonas viridiflava TA043
Species Pseudomonas viridiflava
Strain TA043
Description/Title Sample from Pseudomonas viridiflava TA043
Annotated Genes 5305
Partial Genes 159
Host Information
Host Species Taxonomic Name Primula officinalis
Host Species Common Name cowslip
Host Species Taxonomy ID 170927
Geographic Location
Location Name France
Isolation Source cowslip

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 218
Contigs 545
Contig N50 34387
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471557
NCBI Taxonomy ID 1357291
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5272
CDS 5240
pseudo 33
tRNA 29
rRNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2188
Cytoplasmic Membrane 1201
Periplasmic 155
Outer Membrane 107
Extracellular 41
Unknown 1088
Unknown (This protein may have multiple localization sites) 125
Flagellar 19
Fimbrial 5
T3SS 4

Replicons

218 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF