| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas viridiflava UASWS0038 |
| Species | Pseudomonas viridiflava |
| Strain | UASWS0038 |
| Description/Title | Sample from Pseudomonas viridiflava UASWS0038 |
| Annotated Genes | 5299 |
| Partial Genes | 64 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Rhododendron sp. |
| Host Species Common Name | Rhododendron |
| Host Species Taxonomy ID | 4346 |
| Geographic Location | |
|---|---|
| Location Name | Switzerland |
| Isolation Source | leaf |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | Jan-07 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 201 |
| Contig N50 | 48957 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02471545 |
| NCBI Taxonomy ID | 450396 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5293 |
| CDS | 5227 |
| tRNA | 56 |
| rRNA | 10 |
| pseudo | 6 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2271 |
| Cytoplasmic Membrane | 1277 |
| Periplasmic | 161 |
| Outer Membrane | 112 |
| Extracellular | 53 |
| Unknown | 1212 |
| Unknown (This protein may have multiple localization sites) | 141 |
| Flagellar | 20 |
| Fimbrial | 5 |
| T3SS | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |