Pseudomonas aeruginosa 213BR

Strain Overview
Organism Name Pseudomonas aeruginosa 213BR
Species Pseudomonas aeruginosa
Strain 213BR
Description/Title Sample from Pseudomonas aeruginosa 213BR
Annotated Genes 6169
Partial Genes 3
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Brazil

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 277
nuoD
27		 guaA
9		 trpE
2		 ppsA
5		 aroE
5		 acsA
39		 mutL
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000223965.1
Assembly Status latest
Scaffolds 1
Contigs 1
Contig N50 6719211
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471402
NCBI Taxonomy ID 1051004
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome.

Annotated Features

Feature Count
gene 6148
CDS 6064
tRNA 64
pseudo 21
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2734
Cytoplasmic Membrane 1339
Periplasmic 178
Outer Membrane 165
Extracellular 82
Unknown 1409
Unknown (This protein may have multiple localization sites) 157
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. 6719211 bp 66.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF