Pseudomonas aeruginosa 12-4-4(59)

Strain Overview
Organism Name Pseudomonas aeruginosa 12-4-4(59)
Species Pseudomonas aeruginosa
Strain 12-4-4(59)
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas aeruginosa
Annotated Genes 5876
Partial Genes 12
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Isolation Source Blood culture of burn human patient
Latitude/Longitude NA
Sample Provider
Name Tsute Chen
E-mail tchen@forsyth.org
Institution The Forsyth Institute
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 152
aroE
5		 ppsA
6		 mutL
3		 trpE
7		 guaA
19		 nuoD
4		 acsA
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001482325.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN04351367
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa strain 12-4-4(59), complete genome.

Annotated Features

Feature Count
gene 5876
CDS 5801
tRNA 62
pseudo 35
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2646
Cytoplasmic Membrane 1322
Periplasmic 170
Outer Membrane 162
Extracellular 70
Unknown 1289
Unknown (This protein may have multiple localization sites) 150
Flagellar 17
Fimbrial 4
T3SS 4
Outer Membrane Vesicle 18

Replicons

Name Length GC
Pseudomonas aeruginosa strain 12-4-4(59), complete genome. 6431911 bp 66.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF