Pseudomonas aeruginosa 0C2E isolate RP1

Strain Overview
Organism Name Pseudomonas aeruginosa 0C2E isolate RP1
Species Pseudomonas aeruginosa
Strain 0C2E isolate RP1
Subspecific Genetic Lineage
Description/Title Saccharomyces cerevisiae; sk1xs96_720
Scaffolds
Contigs 102
Contig N50 141566
Assembly Level Contig
Percent GC
Annotated Genes 6446
References
Partial Genes 158
Cross-References
NCBI BioSample Accession SAMEA2342059
NCBI Biosample ID
NCBI Taxonomy ID 4932
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6446
CDS 6376
pseudo 131
tRNA 61
rRNA 8
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2807
Cytoplasmic Membrane 1405
Periplasmic 179
Outer Membrane 164
Extracellular 81
Unknown 1603
Unknown (This protein may have multiple localization sites) 148
Flagellar 16
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 12
Sample Provider
Name
E-mail
Institution European Bioinformatics Institute
Date Collected
Geographic Location
Isolation Source cystic fibrosis airway
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606

Replicons

102 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF

Download Intergenic Region Annotations

File also contains gene annotations

GTF