Pseudomonas aeruginosa 0C2E isolate RP1

Strain Overview
Organism Name Pseudomonas aeruginosa 0C2E isolate RP1
Species Pseudomonas aeruginosa
Strain 0C2E isolate RP1
Description/Title Saccharomyces cerevisiae; sk1xs96_720
Annotated Genes 6446
Partial Genes 158
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Isolation Source cystic fibrosis airway
Sample Provider
Name
E-mail
Institution European Bioinformatics Institute
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 395
trpE
1		 aroE
5		 acsA
6		 ppsA
12		 nuoD
1		 guaA
1		 mutL
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001500235.1
Assembly Status latest
Scaffolds
Contigs 102
Contig N50 141566
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2342059
NCBI Taxonomy ID 4932
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6446
CDS 6376
pseudo 131
tRNA 61
rRNA 8
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2807
Cytoplasmic Membrane 1405
Periplasmic 179
Outer Membrane 164
Extracellular 81
Unknown 1603
Unknown (This protein may have multiple localization sites) 148
Flagellar 16
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 12

Replicons

102 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF