Pseudomonas aeruginosa 0C4A isolate RP45

Strain Overview
Organism Name Pseudomonas aeruginosa 0C4A isolate RP45
Species Pseudomonas aeruginosa
Strain 0C4A isolate RP45
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5795
Partial Genes 106
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Germany: Hannover
Isolation Source cystic fibrosis airway
Sample Provider
Name Julie Jeukens
E-mail julie.jeukens.1@ulaval.ca
Institution University Laval
Date Collected 1995

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
ppsA
27
nuoD
3
guaA
181?
aroE
5
mutL
11
trpE
7
acsA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 65
Contig N50 216197
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04256133
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5795
CDS 5731
pseudo 109
tRNA 57
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2624
Cytoplasmic Membrane 1318
Periplasmic 168
Outer Membrane 158
Extracellular 72
Unknown 1264
Unknown (This protein may have multiple localization sites) 139
Flagellar 17
Fimbrial 7
Host Associated 1
T3SS 4
Outer Membrane Vesicle 13

Replicons

65 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF