Pseudomonas sp. TTU2014-096BSC

Strain Overview
Organism Name Pseudomonas sp. TTU2014-096BSC
Species Pseudomonas sp.
Strain TTU2014-096BSC
Description/Title Microbe sample from Pseudomonas sp. TTU2014-096BSC
Annotated Genes 3860
Partial Genes 78
Host Information
Host Species Taxonomic Name Bos taurus
Host Species Common Name domestic cow
Host Species Taxonomy ID 9913
Geographic Location
Location Name USA: New Mexico
Isolation Source feces
Sample Provider
Name Hattie Webb
E-mail hattie.webb@ttu.edu
Institution Texas Tech University
Date Collected 16-Jun-2014

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 47
Contig N50 202111
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04099673
NCBI Taxonomy ID 1729725
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 3860
CDS 3785
pseudo 72
tRNA 58
rRNA 16
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 403
Cytoplasmic Membrane 176
Periplasmic 19
Outer Membrane 13
Extracellular 6
Unknown 158
Unknown (This protein may have multiple localization sites) 16
Flagellar 16
Fimbrial 1

Replicons

47 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF