Strain Overview | |
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Organism Name | Pseudomonas sp. TTU2014-096BSC |
Species | Pseudomonas sp. |
Strain | TTU2014-096BSC |
Description/Title | Microbe sample from Pseudomonas sp. TTU2014-096BSC |
Annotated Genes | 3860 |
Partial Genes | 78 |
Host Information | |
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Host Species Taxonomic Name | Bos taurus |
Host Species Common Name | domestic cow |
Host Species Taxonomy ID | 9913 |
Geographic Location | |
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Location Name | USA: New Mexico |
Isolation Source | feces |
Sample Provider | |
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Name | Hattie Webb |
hattie.webb@ttu.edu | |
Institution | Texas Tech University |
Date Collected | 16-Jun-2014 |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 47 |
Contig N50 | 202111 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN04099673 |
NCBI Taxonomy ID | 1729725 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 3860 |
CDS | 3785 |
pseudo | 72 |
tRNA | 58 |
rRNA | 16 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 403 |
Cytoplasmic Membrane | 176 |
Periplasmic | 19 |
Outer Membrane | 13 |
Extracellular | 6 |
Unknown | 158 |
Unknown (This protein may have multiple localization sites) | 16 |
Flagellar | 16 |
Fimbrial | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |