| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas stutzeri KF716 |
| Species | Pseudomonas stutzeri |
| Strain | KF716 |
| Description/Title | Human metagenome DNA sample from a female participant in the dbGaP study "The Microbial Ecology of Bacterial Vaginosis" |
| Annotated Genes | 3830 |
| Partial Genes | 35 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Japan:Kitakyushu |
| Isolation Source | soil |
| Latitude/Longitude | 33.909402 N 130.847741 E |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 1983 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 30 |
| Contig N50 | 370448 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMD00023464 |
| NCBI Taxonomy ID | 646099 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 3830 |
| CDS | 3775 |
| tRNA | 51 |
| pseudo | 50 |
| rRNA | 3 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 668 |
| Cytoplasmic Membrane | 300 |
| Periplasmic | 33 |
| Outer Membrane | 22 |
| Extracellular | 7 |
| Unknown | 345 |
| Unknown (This protein may have multiple localization sites) | 30 |
| Flagellar | 6 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |