Strain Overview | |
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Organism Name | Pseudomonas veronii DSM 11331 |
Species | Pseudomonas veronii |
Strain | DSM 11331 |
Description/Title | Microbe sample from Pseudomonas veronii |
Annotated Genes | 6117 |
Partial Genes | 100 |
Host Information |
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Geographic Location | |
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Location Name | France: Contrexeville, Pavillon Spring |
Isolation Source | mineral water |
Sample Provider | |
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Name | Mario von Neubeck |
mario.von-neubeck@wzw.tum.de | |
Institution | Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 95 |
Contig N50 | 176093 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03328800 |
NCBI Taxonomy ID | 76761 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6117 |
CDS | 6049 |
pseudo | 109 |
tRNA | 60 |
rRNA | 7 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 1650 |
Cytoplasmic Membrane | 778 |
Periplasmic | 106 |
Outer Membrane | 62 |
Extracellular | 19 |
Unknown | 790 |
Unknown (This protein may have multiple localization sites) | 62 |
Flagellar | 5 |
Fimbrial | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |