Pseudomonas viridiflava DSM 6694

Strain Overview
Organism Name Pseudomonas viridiflava DSM 6694
Species Pseudomonas viridiflava
Strain DSM 6694
Description/Title Microbe sample from Pseudomonas viridiflava
Annotated Genes 5200
Partial Genes 59
Host Information
Host Species Taxonomic Name Phaseolus coccineus
Host Species Common Name runner bean (Dwarf)
Host Species Taxonomy ID 3886
Geographic Location
Location Name Switzerland
Isolation Source missing
Sample Provider
Name Prabhu Patil
E-mail pbpatil@imtech.res.in
Institution CSIR-Institute of Microbial Technology
Date Collected 1930

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001305955.1
Assembly Status latest
Scaffolds
Contigs 188
Contig N50 50035
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03103695
NCBI Taxonomy ID 33069
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5200
CDS 5142
pseudo 63
tRNA 54
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2122
Cytoplasmic Membrane 1153
Periplasmic 150
Outer Membrane 94
Extracellular 49
Unknown 1046
Unknown (This protein may have multiple localization sites) 118
Flagellar 20
Fimbrial 4
T3SS 3

Replicons

188 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF