| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas viridiflava ICMP2848 |
| Species | Pseudomonas viridiflava |
| Strain | ICMP2848 |
| Description/Title | PvrICMP2848 |
| Annotated Genes | 5180 |
| Partial Genes | 164 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Phaseolus vulgaris |
| Host Species Common Name | kidney bean |
| Host Species Taxonomy ID | 3885 |
| Geographic Location | |
|---|---|
| Location Name | Switzerland |
| Isolation Source | not collected |
| Sample Provider | |
|---|---|
| Name | Shalabh Thakur |
| thakurshalabh@gmail.com | |
| Institution | University of Toronto |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 286 |
| Contig N50 | 40755 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03976266 |
| NCBI Taxonomy ID | 33069 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5180 |
| CDS | 5122 |
| pseudo | 133 |
| tRNA | 53 |
| rRNA | 4 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2096 |
| Cytoplasmic Membrane | 1136 |
| Periplasmic | 148 |
| Outer Membrane | 91 |
| Extracellular | 48 |
| Unknown | 1032 |
| Unknown (This protein may have multiple localization sites) | 116 |
| Flagellar | 20 |
| Fimbrial | 4 |
| T3SS | 3 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |