| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas stutzeri SDM-LAC |
| Species | Pseudomonas stutzeri |
| Strain | SDM-LAC |
| Description/Title | Sample from Pseudomonas stutzeri SDM-LAC |
| Annotated Genes | 3808 |
| Partial Genes | 146 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Isolation Source | soil |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 199 |
| Contig N50 | 39917 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02470922 |
| NCBI Taxonomy ID | 1109445 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 3785 |
| CDS | 3725 |
| tRNA | 52 |
| pseudo | 23 |
| rRNA | 4 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1724 |
| Cytoplasmic Membrane | 911 |
| Periplasmic | 116 |
| Outer Membrane | 73 |
| Extracellular | 41 |
| Unknown | 769 |
| Unknown (This protein may have multiple localization sites) | 91 |
| Flagellar | 33 |
| Fimbrial | 3 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |