Pseudomonas abietaniphila KF717

Strain Overview
Organism Name Pseudomonas abietaniphila KF717
Species Pseudomonas abietaniphila
Strain KF717
Description/Title Human metagenome DNA sample from a female participant in the dbGaP study "The Microbial Ecology of Bacterial Vaginosis"
Scaffolds
Contigs 97
Contig N50 207988
Assembly Level Contig
Percent GC
Annotated Genes 6158
Partial Genes 114
Cross-References
NCBI BioSample Accession SAMD00023465
NCBI Taxonomy ID 646099
NCBI Bioprojects
Assembly DB
RefSeq
Assembly Accession
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6158
CDS 6092
pseudo 126
tRNA 58
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2703
Cytoplasmic Membrane 1334
Periplasmic 184
Outer Membrane 98
Extracellular 62
Unknown 1583
Unknown (This protein may have multiple localization sites) 128
Flagellar 19
Fimbrial 4
T3SS 2
Sample Provider
Name
E-mail
Institution AIST Bioproduction Research Institute microbial and genetic resource research group
Date Collected 1983
Geographic Location
Location Name Japan:Kitakyushu
Latitude/Longitude 33.909402 N 130.847741 E
Environmental Feature (?) biphenyl contaminated soil
Environmental Material (?) soil
Host Information
Host Species Taxonomic Name PRJDB3358

Replicons

97 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF

Download Intergenic Region Annotations

File also contains gene annotations

GTF