| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas abietaniphila KF717 |
| Species | Pseudomonas abietaniphila |
| Strain | KF717 |
| Description/Title | Human metagenome DNA sample from a female participant in the dbGaP study "The Microbial Ecology of Bacterial Vaginosis" |
| Annotated Genes | 6158 |
| Partial Genes | 114 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | PRJDB3358 |
| Geographic Location | |
|---|---|
| Location Name | Japan:Kitakyushu |
| Latitude/Longitude | 33.909402 N 130.847741 E |
| Environmental Feature (?) | biphenyl contaminated soil |
| Environmental Material (?) | soil |
| Sample Provider | |
|---|---|
| Name | |
| Institution | AIST Bioproduction Research Institute microbial and genetic resource research group |
| Date Collected | 1983 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 97 |
| Contig N50 | 207988 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMD00023465 |
| NCBI Taxonomy ID | 89065 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6158 |
| CDS | 6092 |
| pseudo | 126 |
| tRNA | 58 |
| rRNA | 4 |
| ncRNA | 3 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2703 |
| Cytoplasmic Membrane | 1334 |
| Periplasmic | 184 |
| Outer Membrane | 98 |
| Extracellular | 62 |
| Unknown | 1583 |
| Unknown (This protein may have multiple localization sites) | 128 |
| Flagellar | 19 |
| Fimbrial | 4 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |