Pseudomonas abietaniphila KF701

Strain Overview
Organism Name Pseudomonas abietaniphila KF701
Species Pseudomonas abietaniphila
Strain KF701
Subspecific Genetic Lineage
Description/Title Human metagenome DNA sample from a female participant in the dbGaP study "The Microbial Ecology of Bacterial Vaginosis"
Scaffolds
Contigs 140
Contig N50 90844
Assembly Level Contig
Percent GC
Annotated Genes 6154
References
Partial Genes 98
Cross-References
NCBI BioSample Accession SAMD00023455
NCBI Biosample ID 4091748
NCBI Taxonomy ID 646099
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6154
CDS 6088
pseudo 113
tRNA 58
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2702
Cytoplasmic Membrane 1330
Periplasmic 184
Outer Membrane 98
Extracellular 59
Unknown 1585
Unknown (This protein may have multiple localization sites) 130
Flagellar 19
Fimbrial 4
T3SS 2
Sample Provider
Name
E-mail
Institution AIST Bioproduction Research Institute microbial and genetic resource research group
Date Collected 1983
Geographic Location
Location Name Japan:Kitakyushu
Latitude/Longitude 33.909402 N 130.847741 E
Environmental Feature (?) biphenyl contaminated soil
Environmental Material (?) soil
Host Information
Host Species Taxonomic Name PRJDB3350

Replicons

140 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF

Download Intergenic Region Annotations

File also contains gene annotations

GTF