Strain Overview | |
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Organism Name | Pseudomonas aeruginosa 8380 |
Species | Pseudomonas aeruginosa |
Strain | 8380 |
Description/Title | Pseudomonas aeruginosa 8380 |
Annotated Genes | 6086 |
Partial Genes | 13 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location | |
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Location Name | Japan |
Latitude/Longitude | missing |
Environmental Feature (?) | missing |
Environmental Material (?) | missing |
Sample Provider | |
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Name | |
Institution | Tokushima University |
Date Collected | 1989-11-22 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 2619 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMD00027370 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas aeruginosa DNA, complete genome, strain: 8380. |
Feature | Count |
---|---|
gene | 6086 |
CDS | 6004 |
tRNA | 65 |
pseudo | 28 |
rRNA | 12 |
ncRNA | 4 |
tmRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2697 |
Cytoplasmic Membrane | 1354 |
Periplasmic | 173 |
Outer Membrane | 163 |
Extracellular | 69 |
Unknown | 1400 |
Unknown (This protein may have multiple localization sites) | 155 |
Flagellar | 17 |
Fimbrial | 7 |
T3SS | 4 |
Outer Membrane Vesicle | 12 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas aeruginosa DNA, complete genome, strain: 8380. | 6613260 bp | 66.2% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |