Pseudomonas aeruginosa AU10014

Strain Overview
Organism Name Pseudomonas aeruginosa AU10014
Species Pseudomonas aeruginosa
Strain AU10014
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5885
Partial Genes 81
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2005

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
mutL
219?		 guaA
61		 ppsA
6		 acsA
103		 trpE
8		 aroE
~11		 nuoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001554395.1
Assembly Status latest
Scaffolds
Contigs 76
Contig N50 168780
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436462
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5885
CDS 5823
pseudo 169
tRNA 55
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2644
Cytoplasmic Membrane 1314
Periplasmic 174
Outer Membrane 160
Extracellular 65
Unknown 1328
Unknown (This protein may have multiple localization sites) 142
Flagellar 17
Fimbrial 5
T3SS 4
Outer Membrane Vesicle 8

Replicons

76 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF