Pseudomonas aeruginosa AU6854

Strain Overview
Organism Name Pseudomonas aeruginosa AU6854
Species Pseudomonas aeruginosa
Strain AU6854
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6088
Partial Genes 86
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2004

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 179
mutL
3		 acsA
36		 trpE
7		 aroE
27		 nuoD
4		 guaA
28		 ppsA
13
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001554495.1
Assembly Status latest
Scaffolds
Contigs 66
Contig N50 276987
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436469
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6088
CDS 6028
pseudo 174
tRNA 54
ncRNA 3
rRNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2734
Cytoplasmic Membrane 1359
Periplasmic 176
Outer Membrane 157
Extracellular 74
Unknown 1391
Unknown (This protein may have multiple localization sites) 147
Flagellar 17
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 11

Replicons

66 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF