Pseudomonas aeruginosa AU10409

Strain Overview
Organism Name Pseudomonas aeruginosa AU10409
Species Pseudomonas aeruginosa
Strain AU10409
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5852
Partial Genes 84
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2005

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
aroE
20		 nuoD
3		 ppsA
~3		 mutL
3		 trpE
7		 acsA
22		 guaA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001554695.1
Assembly Status latest
Scaffolds
Contigs 56
Contig N50 184471
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436485
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5852
CDS 5787
pseudo 203
tRNA 57
ncRNA 4
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2648
Cytoplasmic Membrane 1286
Periplasmic 165
Outer Membrane 149
Extracellular 66
Unknown 1342
Unknown (This protein may have multiple localization sites) 137
Flagellar 18
Fimbrial 4
T3SS 4
Outer Membrane Vesicle 15

Replicons

56 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF