Pseudomonas aeruginosa AU11991

Strain Overview
Organism Name Pseudomonas aeruginosa AU11991
Species Pseudomonas aeruginosa
Strain AU11991
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5635
Partial Genes 69
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2006

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 553
trpE
45		 mutL
11		 aroE
5		 ppsA
4		 nuoD
4		 guaA
1		 acsA
17
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001554895.1
Assembly Status latest
Scaffolds
Contigs 47
Contig N50 345115
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436495
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5635
CDS 5572
pseudo 186
tRNA 56
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2572
Cytoplasmic Membrane 1278
Periplasmic 164
Outer Membrane 154
Extracellular 64
Unknown 1202
Unknown (This protein may have multiple localization sites) 142
Flagellar 17
Fimbrial 4
T3SS 4
Outer Membrane Vesicle 11

Replicons

47 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF