Pseudomonas aeruginosa AU19804

Strain Overview
Organism Name Pseudomonas aeruginosa AU19804
Species Pseudomonas aeruginosa
Strain AU19804
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5475
Partial Genes 88
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
guaA
11		 nuoD
1		 acsA
~23		 aroE
5		 trpE
7		 mutL
7		 ppsA
12
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001554995.1
Assembly Status latest
Scaffolds
Contigs 66
Contig N50 179368
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436502
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5475
CDS 5414
pseudo 214
tRNA 55
ncRNA 3
rRNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2510
Cytoplasmic Membrane 1244
Periplasmic 166
Outer Membrane 147
Extracellular 64
Unknown 1149
Unknown (This protein may have multiple localization sites) 141
Flagellar 17
Fimbrial 3
Host Associated 1
T3SS 4
Outer Membrane Vesicle 10

Replicons

66 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF