Pseudomonas aeruginosa AU17550

Strain Overview
Organism Name Pseudomonas aeruginosa AU17550
Species Pseudomonas aeruginosa
Strain AU17550
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5587
Partial Genes 54
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2009

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
aroE
22		 mutL
180		 trpE
7		 acsA
28		 ppsA
4		 nuoD
4		 guaA
163
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001555015.1
Assembly Status latest
Scaffolds
Contigs 35
Contig N50 418726
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436508
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5587
CDS 5523
pseudo 180
tRNA 56
ncRNA 4
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2531
Cytoplasmic Membrane 1278
Periplasmic 161
Outer Membrane 147
Extracellular 63
Unknown 1199
Unknown (This protein may have multiple localization sites) 150
Flagellar 17
Fimbrial 4
T3SS 4
Outer Membrane Vesicle 14

Replicons

35 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF