Pseudomonas aeruginosa AU11990

Strain Overview
Organism Name Pseudomonas aeruginosa AU11990
Species Pseudomonas aeruginosa
Strain AU11990
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5643
Partial Genes 58
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2006

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 553
mutL
11
acsA
17
ppsA
4
trpE
45
guaA
1
nuoD
4
aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 39
Contig N50 428683
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436494
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5643
CDS 5580
pseudo 173
tRNA 56
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2575
Cytoplasmic Membrane 1281
Periplasmic 163
Outer Membrane 150
Extracellular 66
Unknown 1205
Unknown (This protein may have multiple localization sites) 144
Flagellar 17
Fimbrial 4
T3SS 4
Outer Membrane Vesicle 11

Replicons

39 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF