Pseudomonas aeruginosa AU25116

Strain Overview
Organism Name Pseudomonas aeruginosa AU25116
Species Pseudomonas aeruginosa
Strain AU25116
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5622
Partial Genes 111
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 553
aroE
5		 ppsA
4		 acsA
17		 guaA
1		 nuoD
4		 trpE
45		 mutL
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001555295.1
Assembly Status latest
Scaffolds
Contigs 80
Contig N50 215654
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436498
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5622
CDS 5558
pseudo 216
tRNA 56
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2567
Cytoplasmic Membrane 1271
Periplasmic 161
Outer Membrane 149
Extracellular 66
Unknown 1206
Unknown (This protein may have multiple localization sites) 142
Flagellar 17
Fimbrial 4
T3SS 4
Outer Membrane Vesicle 12

Replicons

80 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF