Pseudomonas aeruginosa AU10756

Strain Overview
Organism Name Pseudomonas aeruginosa AU10756
Species Pseudomonas aeruginosa
Strain AU10756
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6189
Partial Genes 69
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2006

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
acsA
36		 aroE
27		 trpE
7		 ppsA
13		 nuoD
4		 guaA
28		 mutL
231?
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001555335.1
Assembly Status latest
Scaffolds
Contigs 53
Contig N50 373936
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436512
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6189
CDS 6124
pseudo 141
tRNA 57
ncRNA 4
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2760
Cytoplasmic Membrane 1376
Periplasmic 172
Outer Membrane 158
Extracellular 72
Unknown 1440
Unknown (This protein may have multiple localization sites) 156
Flagellar 17
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 9

Replicons

53 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF