Pseudomonas aeruginosa AU24807

Strain Overview
Organism Name Pseudomonas aeruginosa AU24807
Species Pseudomonas aeruginosa
Strain AU24807
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5978
Partial Genes 139
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
acsA
36		 guaA
28		 nuoD
4		 aroE
27		 mutL
231?		 trpE
7		 ppsA
13
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001555395.1
Assembly Status latest
Scaffolds
Contigs 89
Contig N50 139380
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436514
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5978
CDS 5913
pseudo 296
tRNA 57
ncRNA 4
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2695
Cytoplasmic Membrane 1333
Periplasmic 167
Outer Membrane 148
Extracellular 65
Unknown 1363
Unknown (This protein may have multiple localization sites) 152
Flagellar 17
Fimbrial 4
T3SS 4
Outer Membrane Vesicle 8

Replicons

89 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF