Strain Overview | |
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Organism Name | Pseudomonas aeruginosa AU23529 |
Species | Pseudomonas aeruginosa |
Strain | AU23529 |
Description/Title | Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa |
Annotated Genes | 6070 |
Partial Genes | 71 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location | |
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Location Name | USA |
Isolation Source | sputum |
Latitude/Longitude | not applicable |
Sample Provider | |
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Name | Theodore Spilker |
tspilker@umich.edu | |
Institution | University of Michigan |
Date Collected | 2011 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 17 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 51 |
Contig N50 | 322358 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN04436517 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6070 |
CDS | 6005 |
pseudo | 142 |
tRNA | 57 |
rRNA | 4 |
ncRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 2720 |
Cytoplasmic Membrane | 1371 |
Periplasmic | 173 |
Outer Membrane | 155 |
Extracellular | 65 |
Unknown | 1387 |
Unknown (This protein may have multiple localization sites) | 147 |
Flagellar | 17 |
Fimbrial | 8 |
T3SS | 4 |
Outer Membrane Vesicle | 12 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |