Pseudomonas aeruginosa AU17965

Strain Overview
Organism Name Pseudomonas aeruginosa AU17965
Species Pseudomonas aeruginosa
Strain AU17965
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6076
Partial Genes 55
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Latitude/Longitude not applicable
Sample Provider
Name Theodore Spilker
E-mail tspilker@umich.edu
Institution University of Michigan
Date Collected 2009

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 17
trpE
7		 nuoD
9		 mutL
7		 aroE
5		 guaA
1		 acsA
11		 ppsA
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001555455.1
Assembly Status latest
Scaffolds
Contigs 40
Contig N50 375961
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04436516
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6076
CDS 6011
pseudo 128
tRNA 57
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2724
Cytoplasmic Membrane 1372
Periplasmic 173
Outer Membrane 156
Extracellular 66
Unknown 1385
Unknown (This protein may have multiple localization sites) 148
Flagellar 17
Fimbrial 8
T3SS 4
Outer Membrane Vesicle 12

Replicons

40 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF