Pseudomonas aeruginosa 105857

Strain Overview
Organism Name Pseudomonas aeruginosa 105857
Species Pseudomonas aeruginosa
Strain 105857
Description/Title Pathogen: Pseudomonas aeruginosa clinical sample from wounded military personnel
Annotated Genes 6471
Partial Genes 108
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease infection
Host Species Tissue Sampled wound
Geographic Location
Latitude/Longitude 29.46 N 98.41 W
Sample Provider
Name SAMMC staff
E-mail arivetba@miamioh.edu
Institution Miami University
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 244
guaA
12
ppsA
4
mutL
3
nuoD
14
trpE
7
aroE
5
acsA
17
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 96
Contig N50 261097
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03076166
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6471
CDS 6399
pseudo 99
tRNA 63
ncRNA 4
rRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2832
Cytoplasmic Membrane 1368
Periplasmic 177
Outer Membrane 166
Extracellular 80
Unknown 1634
Unknown (This protein may have multiple localization sites) 156
Flagellar 18
Fimbrial 7
Host Associated 2
T3SS 4
Outer Membrane Vesicle 26

Replicons

93 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF