Strain Overview | |
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Organism Name | Pseudomonas aeruginosa 105857 |
Species | Pseudomonas aeruginosa |
Strain | 105857 |
Description/Title | Pathogen: Pseudomonas aeruginosa clinical sample from wounded military personnel |
Annotated Genes | 6471 |
Partial Genes | 108 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | infection |
Host Species Tissue Sampled | wound |
Geographic Location | |
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Latitude/Longitude | 29.46 N 98.41 W |
Sample Provider | |
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Name | SAMMC staff |
arivetba@miamioh.edu | |
Institution | Miami University |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 244 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 96 |
Contig N50 | 261097 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03076166 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6471 |
CDS | 6399 |
pseudo | 99 |
tRNA | 63 |
ncRNA | 4 |
rRNA | 4 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 2832 |
Cytoplasmic Membrane | 1368 |
Periplasmic | 177 |
Outer Membrane | 166 |
Extracellular | 80 |
Unknown | 1634 |
Unknown (This protein may have multiple localization sites) | 156 |
Flagellar | 18 |
Fimbrial | 7 |
Host Associated | 2 |
T3SS | 4 |
Outer Membrane Vesicle | 26 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |