Pseudomonas sp. HUK17 HUK17

Strain Overview
Organism Name Pseudomonas sp. HUK17 HUK17
Species Pseudomonas sp. HUK17
Strain HUK17
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp. HUK17
Annotated Genes 2300
Partial Genes 18
Host Information
Geographic Location
Location Name France: Huningue
Isolation Source hexachlorocyclohexane-contaminated soil
Latitude/Longitude 47.59 N 7.580000000000041 E
Environmental Feature (?) industrial site
Environmental Material (?) soil
Sample Provider
Name Cyrielle GASC
E-mail cyrielle.gasc@sfr.fr
Institution Universite d'Auvergne
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001566765.1
Assembly Status latest
Scaffolds
Contigs 15
Contig N50 230147
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN04482516
NCBI Taxonomy ID 1799359
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 2300
CDS 2270
tRNA 25
pseudo 23
ncRNA 5

Subcellular Localization

Localization Count
Cytoplasmic 1040
Cytoplasmic Membrane 575
Periplasmic 68
Outer Membrane 41
Extracellular 11
Unknown 483
Unknown (This protein may have multiple localization sites) 52
Fimbrial 1

Replicons

15 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF