Pseudomonas viridiflava ICMP 2848

Strain Overview
Organism Name Pseudomonas viridiflava ICMP 2848
Species Pseudomonas viridiflava
Strain ICMP 2848
Description/Title Microbe sample from Pseudomonas viridiflava
Annotated Genes 5209
Partial Genes 50
Host Information
Host Species Taxonomic Name Phaseolus vulgaris
Host Species Common Name Phaseolus vulgaris
Geographic Location
Location Name Switzerland
Sample Provider
Name Preetinanda Panda
E-mail preeti.panda@plantandfood.co.nz
Institution New Zealand Institute for Plant & Food research
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001642795.1
Assembly Status latest
Scaffolds
Contigs 90
Contig N50 190487
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04102828
NCBI Taxonomy ID 33069
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5209
CDS 5147
pseudo 66
tRNA 52
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2253
Cytoplasmic Membrane 1265
Periplasmic 161
Outer Membrane 111
Extracellular 53
Unknown 1172
Unknown (This protein may have multiple localization sites) 132
Flagellar 20
Fimbrial 5
T3SS 4

Replicons

48 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF