Pseudomonas viridiflava CDRTc14

Strain Overview
Organism Name Pseudomonas viridiflava CDRTc14
Species Pseudomonas viridiflava
Strain CDRTc14
Description/Title Whole-Genome Sequence of Pseudomonas syringae, isolated from a weed growing in a vineyard
Annotated Genes 5291
Partial Genes 26
Host Information
Host Species Taxonomic Name Lepidium draba
Host Species Common Name Lepidium draba
Geographic Location
Location Name Austria: National Park of Illmitz
Isolation Source weed growing in a vineyard
Latitude/Longitude 47.46 N 16.470000000000027 E
Environmental Feature (?) Vineyard
Environmental Material (?) Plant root
Sample Provider
Name Abdul Samad
E-mail samad2386@gmail.com
Institution AIT Austrian Institute of Technology GmbH
Date Collected 15-Apr-2013

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001716855.1
Assembly Status latest
Scaffolds
Contigs 38
Contig N50 295098
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN05413107
NCBI Taxonomy ID 33069
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5291
CDS 5220
tRNA 58
pseudo 40
rRNA 9
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2260
Cytoplasmic Membrane 1280
Periplasmic 168
Outer Membrane 114
Extracellular 55
Unknown 1211
Unknown (This protein may have multiple localization sites) 132
Flagellar 19
Fimbrial 9
T3SS 4

Replicons

38 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF