| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas xanthomarina UASWS0955 |
| Species | Pseudomonas xanthomarina |
| Strain | UASWS0955 |
| Description/Title | Pseudomonas xanthomarina strain UASWS0955 |
| Annotated Genes | 4191 |
| Partial Genes | 37 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Switzerland: Geneva |
| Isolation Source | sewage sludge |
| Latitude/Longitude | 46.12 N 6.080000000000041 E |
| Sample Provider | |
|---|---|
| Name | Francois Lefort |
| francois.lefort@hesge.ch | |
| Institution | University of Applied Sciences and Arts Western Switzerland hepia |
| Date Collected | 2014 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 40 |
| Contig N50 | 497938 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN05366370 |
| NCBI Taxonomy ID | 271420 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4191 |
| CDS | 4125 |
| tRNA | 58 |
| pseudo | 46 |
| ncRNA | 4 |
| rRNA | 3 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1899 |
| Cytoplasmic Membrane | 998 |
| Periplasmic | 118 |
| Outer Membrane | 107 |
| Extracellular | 33 |
| Unknown | 856 |
| Unknown (This protein may have multiple localization sites) | 114 |
| Flagellar | 31 |
| Fimbrial | 3 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |