Strain Overview | |
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Organism Name | Pseudomonas thermotolerans DSM 14292 |
Species | Pseudomonas thermotolerans |
Strain | DSM 14292 |
Description/Title | Generic sample from Pseudomonas thermotolerans DSM 14292 |
Annotated Genes | 3444 |
Partial Genes | 61 |
Host Information |
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Geographic Location | |
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Location Name | Portugal |
Sample Provider | |
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Name | |
Institution | |
Date Collected | Missing |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 75 |
Contigs | 77 |
Contig N50 | 151416 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02441073 |
NCBI Taxonomy ID | 1123021 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 3421 |
CDS | 3358 |
tRNA | 57 |
pseudo | 23 |
rRNA | 5 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 1685 |
Cytoplasmic Membrane | 727 |
Periplasmic | 87 |
Outer Membrane | 82 |
Extracellular | 27 |
Unknown | 647 |
Unknown (This protein may have multiple localization sites) | 103 |
Flagellar | 31 |
Fimbrial | 3 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |