| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas caeni DSM 24390 |
| Species | Pseudomonas caeni |
| Strain | DSM 24390 |
| Description/Title | Generic sample from Pseudomonas caeni DSM 24390 |
| Annotated Genes | 2629 |
| Partial Genes | 24 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Isolation Source | sludge of an anaerobic ammonium-oxidizing bioreactor |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 24 |
| Contig N50 | 312453 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02440589 |
| NCBI Taxonomy ID | 521719 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 2626 |
| CDS | 2570 |
| tRNA | 42 |
| rRNA | 10 |
| pseudo | 3 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1202 |
| Cytoplasmic Membrane | 622 |
| Periplasmic | 72 |
| Outer Membrane | 52 |
| Extracellular | 16 |
| Unknown | 553 |
| Unknown (This protein may have multiple localization sites) | 53 |
| Flagellar | 17 |
| Fimbrial | 1 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |