Pseudomonas synxantha BG33R

Strain Overview
Organism Name Pseudomonas synxantha BG33R - Assembly GCF_000263715.2
Species Pseudomonas synxantha
Strain BG33R
Description/Title Generic sample from Pseudomonas synxantha BG33R
Annotated Genes 5628
Partial Genes 1
Host Information
Geographic Location
Location Name USA: South Carolina
Isolation Source rhizosphere of a peach tree in an orchard near Elgin

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000263715.2
Assembly Status latest
Scaffolds
Contigs 3
Contig N50 2992462
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02436586
NCBI Taxonomy ID 96901
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 5615
CDS 5497
tRNA 68
rRNA 19
ncRNA 18
pseudo 13
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2355
Cytoplasmic Membrane 1259
Periplasmic 174
Outer Membrane 159
Extracellular 86
Unknown 1340
Unknown (This protein may have multiple localization sites) 124
Flagellar 18
Fimbrial 5
T3SS 2

Replicons

Name Length GC
Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. 6297495 bp 59.7%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF