| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas chlororaphis O6 |
| Species | Pseudomonas chlororaphis |
| Strain | O6 |
| Description/Title | Generic sample from Pseudomonas chlororaphis O6 |
| Annotated Genes | 6315 |
| Partial Genes | 16 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | USA: Utah |
| Isolation Source | soil |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 31 |
| Contig N50 | 558557 |
| Assembly Level | Chromosome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02436415 |
| NCBI Taxonomy ID | 1037915 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. |
| Feature | Count |
|---|---|
| gene | 6311 |
| CDS | 6223 |
| tRNA | 60 |
| ncRNA | 20 |
| rRNA | 7 |
| pseudo | 4 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2710 |
| Cytoplasmic Membrane | 1464 |
| Periplasmic | 204 |
| Outer Membrane | 165 |
| Extracellular | 75 |
| Unknown | 1464 |
| Unknown (This protein may have multiple localization sites) | 141 |
| Flagellar | 17 |
| Fimbrial | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. | 6980251 bp | 62.9% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |