Pseudomonas fluorescens SS101

Strain Overview
Organism Name Pseudomonas fluorescens SS101
Species Pseudomonas fluorescens
Strain SS101
Description/Title Generic sample from Pseudomonas fluorescens SS101
Annotated Genes 5482
Partial Genes 1
Host Information
Geographic Location
Location Name Netherlands
Isolation Source rhizosphere of wheat grown in soil collected from a polder near Bergen op Zoom

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
gyrB
53		 rpoD
5		 rpoB
~71		 recA
76		 glnS
~76		 nuoD
~79		 ileS
~76
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000263675.1
Assembly Status latest
Scaffolds
Contigs 2
Contig N50 4580619
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02436383
NCBI Taxonomy ID 1038924
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 5475
CDS 5366
tRNA 68
rRNA 19
ncRNA 16
pseudo 7
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2317
Cytoplasmic Membrane 1257
Periplasmic 182
Outer Membrane 163
Extracellular 67
Unknown 1264
Unknown (This protein may have multiple localization sites) 116
Flagellar 18
Fimbrial 9
T3SS 2

Replicons

Name Length GC
Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. 6179543 bp 60.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF