| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Species | Pseudomonas chlororaphis subsp. aureofaciens |
| Strain | 30-84 |
| Description/Title | Generic sample from Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Annotated Genes | 5903 |
| Partial Genes | 50 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Triticum aestivum |
| Host Species Common Name | wheat |
| Host Species Taxonomy ID | 4565 |
| Geographic Location | |
|---|---|
| Location Name | USA: Washington |
| Isolation Source | wheat rhizosphere |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 1984 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 14 |
| Contig N50 | 1716951 |
| Assembly Level | Chromosome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02436365 |
| NCBI Taxonomy ID | 1038921 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. |
| Feature | Count |
|---|---|
| gene | 5880 |
| CDS | 5787 |
| tRNA | 73 |
| pseudo | 23 |
| rRNA | 19 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2559 |
| Cytoplasmic Membrane | 1391 |
| Periplasmic | 190 |
| Outer Membrane | 157 |
| Extracellular | 61 |
| Unknown | 1293 |
| Unknown (This protein may have multiple localization sites) | 134 |
| Flagellar | 17 |
| Fimbrial | 3 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. | 6666321 bp | 62.9% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |