Pseudomonas aeruginosa AH16

Strain Overview
Organism Name Pseudomonas aeruginosa AH16
Species Pseudomonas aeruginosa
Strain AH16
Description/Title Generic sample from Pseudomonas aeruginosa AH16
Annotated Genes 6248
Partial Genes 106
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name China: Anhui
Isolation Source sputum
Sample Provider
Name Da-qiang Wu
E-mail daqwu@126.com
Institution Anhui University of Traditional Chinese Medicine
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 155
aroE
5		 ppsA
13		 guaA
36		 nuoD
3		 acsA
28		 mutL
3		 trpE
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000287875.1
Assembly Status latest
Scaffolds 130
Contigs 130
Contig N50 94805
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02393806
NCBI Taxonomy ID 1208103
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6113
CDS 5975
pseudo 135
tRNA 58
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2674
Cytoplasmic Membrane 1334
Periplasmic 165
Outer Membrane 156
Extracellular 73
Unknown 1424
Unknown (This protein may have multiple localization sites) 149
Flagellar 17
Fimbrial 8
T3SS 3

Replicons

130 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF