Pseudomonas aeruginosa PAO1-VE13

Strain Overview
Organism Name Pseudomonas aeruginosa PAO1-VE13 - Assembly GCF_000484545.2
Species Pseudomonas aeruginosa
Strain PAO1-VE13
Description/Title Sample from Pseudomonas aeruginosa PAO1-VE13
Annotated Genes 5752
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 549
ppsA
1		 trpE
7		 acsA
7		 nuoD
4		 aroE
5		 guaA
12		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000484545.2
Assembly Status latest
Scaffolds 1
Contigs 4
Contig N50 3201137
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603590
NCBI Taxonomy ID 1367494
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa PAO1-VE13 genome.

Annotated Features

Feature Count
gene 5746
CDS 5669
tRNA 64
rRNA 12
pseudo 6

Subcellular Localization

Localization Count
Cytoplasmic 2603
Cytoplasmic Membrane 1313
Periplasmic 170
Outer Membrane 169
Extracellular 73
Unknown 1201
Unknown (This protein may have multiple localization sites) 140

Replicons

Name Length GC
Pseudomonas aeruginosa PAO1-VE13 genome. 6265484 bp 66.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF