Strain Overview | |
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Organism Name | Pseudomonas aeruginosa PAO1-VE2 - Assembly GCF_000484495.2 |
Species | Pseudomonas aeruginosa |
Strain | PAO1-VE2 |
Description/Title | Sample from Pseudomonas aeruginosa PAO1-VE2 |
Annotated Genes | 5751 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location |
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Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | paeruginosa | 549 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
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Assembly Accession | Assembly Status | latest |
Scaffolds | 1 |
Contigs | 4 |
Contig N50 | 3202222 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02603589 |
NCBI Taxonomy ID | 1367493 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas aeruginosa PAO1-VE2 genome. |
Feature | Count |
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gene | 5745 |
CDS | 5668 |
tRNA | 64 |
rRNA | 12 |
pseudo | 6 |
Localization | Count |
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Cytoplasmic | 2603 |
Cytoplasmic Membrane | 1312 |
Periplasmic | 170 |
Outer Membrane | 169 |
Extracellular | 73 |
Unknown | 1201 |
Unknown (This protein may have multiple localization sites) | 140 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas aeruginosa PAO1-VE2 genome. | 6265484 bp | 66.5% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |