Pseudomonas aeruginosa C7447m

Strain Overview
Organism Name Pseudomonas aeruginosa C7447m - Assembly GCF_000468935.2
Species Pseudomonas aeruginosa
Strain C7447m
Description/Title Sample from Pseudomonas aeruginosa c7447m
Annotated Genes 5731
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
guaA
11		 nuoD
4		 aroE
55		 acsA
11		 ppsA
4		 mutL
3		 trpE
~45
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000468935.2
Assembly Status latest
Scaffolds 1
Contigs 179
Contig N50 193690
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603588
NCBI Taxonomy ID 1352355
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa c7447m genome.

Annotated Features

Feature Count
gene 5724
CDS 5642
tRNA 64
rRNA 12
pseudo 7

Subcellular Localization

Localization Count
Cytoplasmic 2606
Cytoplasmic Membrane 1304
Periplasmic 170
Outer Membrane 160
Extracellular 73
Unknown 1188
Unknown (This protein may have multiple localization sites) 141

Replicons

Name Length GC
Pseudomonas aeruginosa c7447m genome. 6262305 bp 66.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF