Strain Overview | |
---|---|
Organism Name | Pseudomonas thermotolerans J53 |
Species | Pseudomonas thermotolerans |
Strain | J53 |
Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas thermotolerans J53 |
Annotated Genes | 3529 |
Partial Genes | 138 |
Host Information |
---|
Geographic Location | |
---|---|
Environmental Feature (?) | not provided; submitted under MIGS 2.1 |
Environmental Material (?) | not provided; submitted under MIGS 2.1 |
Sample Provider | |
---|---|
Name | |
Institution | |
Date Collected | missing |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 62 |
Contigs | 64 |
Contig N50 | 109861 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN02597198 |
NCBI Taxonomy ID | 935867 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 3502 |
CDS | 3433 |
tRNA | 58 |
pseudo | 27 |
rRNA | 9 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 1659 |
Cytoplasmic Membrane | 690 |
Periplasmic | 78 |
Outer Membrane | 74 |
Extracellular | 29 |
Unknown | 541 |
Unknown (This protein may have multiple localization sites) | 91 |
Flagellar | 28 |
Fimbrial | 3 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |