Pseudomonas aeruginosa PAK

Strain Overview
Organism Name Pseudomonas aeruginosa PAK - Assembly GCF_000408865.1
Species Pseudomonas aeruginosa
Strain PAK
Description/Title Sample from Pseudomonas aeruginosa PAK
Annotated Genes 5888
Partial Genes 26
Host Information
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 693
ppsA
4		 trpE
14		 aroE
5		 mutL
11		 acsA
11		 nuoD
4		 guaA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000408865.1
Assembly Status latest
Scaffolds 1
Contigs 26
Contig N50 742168
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02596970
NCBI Taxonomy ID 1009714
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5886
CDS 5806
tRNA 66
rRNA 14
pseudo 2

Subcellular Localization

Localization Count
Cytoplasmic 2660
Cytoplasmic Membrane 1333
Periplasmic 169
Outer Membrane 163
Extracellular 74
Unknown 1261
Unknown (This protein may have multiple localization sites) 146
Flagellar 17
Fimbrial 3
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa PAK genomic scaffold acUKM-supercont-complete, whole genome shotgun sequence. 6408825 bp 66.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF